Note: Gene models were unavailable at the time this plot was constructed. See this page for details:
"Gene Ortholog Familes of H. glycines and Globodera ellingtonae" https://www.scnbase.org/gene-ortholog-familes-h-glycines-and-globodera-e...
Hglycines scaffolds start, end, G. ellingotnae scaffolds, start, end Read more about Synteny between H. glycines V1 and Globodera ellingtonae genomes
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Globodera ellingtonae (2).
Gene by gene format download: ellingtonaeiadhoretable.docx
Public gene models were not available at the time of the analysis, so genes were called using Braker.pl version 1. The Globodera genome and the augustus.gff3 file obtained through alignments of SRR3162514 at NCBI.
Read more about Gene Ortholog Familes of H. glycines and Globodera ellingtonae
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Globodera pallida (2).
1. Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.
2. Cotton, James A., et al. "The genome and life-stage specific transcriptomes of Globodera pallida elucidate key aspects of plant parasitism by a cyst nematode." Genome biology 15.3 (2014): R43.
Read more about Gene Ortholog Familes of H. glycines and Globodera pallida
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Globodera rostochiensis (2).
1. Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.
2. Eves-van den Akker, Sebastian, et al. "The genome of the yellow potato cyst nematode, Globodera rostochiensis, reveals insights into the basis of parasitism and virulence." Genome biology 17.1 (2016): 124. Read more about Gene Ortholog Familes of H. glycines and Globodera rostochiensis
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Meloidogyne incognita (2).
1. Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.
2. Abad, Pierre, et al. "Genome sequence of the metazoan plant-parasitic nematode Meloidogyne incognita." Nature biotechnology 26.8 (2008): 909.
Read more about Gene Ortholog Familes of H. glycines and Meloidogyne incognita
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Bursaphelenchus xylophilus (2).
1. Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.
2. Kikuchi, Taisei, et al. "Genomic insights into the origin of parasitism in the emerging plant pathogen Bursaphelenchus xylophilus." PLoS pathogens 7.9 (2011): e1002219. Read more about Gene Ortholog Familes of H. glycines and Bursephelenchus xylophilus
Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Meloidogyne hapla (2).
1. Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.
2. Opperman, Charles H., et al. "Sequence and genetic map of Meloidogyne hapla: A compact nematode genome for plant parasitism." Proceedings of the National Academy of Sciences (2008).
Read more about Gene Ortholog Familes of H. glycines and Meloidogyne hapla
H.glycines_scaffold start end G.pallida_scaffold start end Read more about Synteny between H. glycines V1 and Globodera pallida genomes
H.glycines_scaffold start end M.hapla_scaffold start end Read more about Synteny between H. glycines V1 and Meloidogyne hapla genomes
H.glycines_scaffold start end M.incognita_scaffold start end Read more about Synteny between H. glycines V1 and Meloidogyne incognita genomes
