Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name:
MEME to find Dog Box, BLAST to align GS-like effectors
Program, Pipeline or Method version:
H.glycines Dog-box genes
Materials & Methods (Description and/or Program Settings):
DOG-box promoter motifs were identified with MEME. DOG-box genes were identified by co-alignment of GS like effectors from H. glycines and G. rostochiensis and enriched for Dog-box motifs 100-150 bp upstream of the start codon.