Gene expression

24H control SCN exposed to roots -- SRR5447114

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447114 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

24H control SCN exposed to roots -- SRR5447110

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447110 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

3H control SCN exposed to roots -- SRR5447119

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447119 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

3H control SCN exposed to roots -- SRR5447118

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447118 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

24H attraction SCN exposed to roots -- SRR5447112

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447112 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

3H attraction SCN exposed to roots -- SRR5447111

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447111_1 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Category: 

3H attraction SCN exposed to roots -- SRR5447117

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447117 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

24H attraction SCN exposed to roots -- SRR5447108

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447108 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

24H control SCN exposed to roots -- SRR5447115

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447115 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

24H attraction SCN exposed to roots -- SRR5447113

Organism: 
Heterodera glycines v2 (Soybean Cyst Nematode (v2))
Program, Pipeline Name or Method Name: 
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig
Program, Pipeline or Method version: 
Trim_galore 0.4.5, Hisat2 2.1.0, Samtools 1.8.6, Bedtools2.27.1, BedgraphToBigwig
Source Name: 
SRR5447113 , Chinese Academy of Sciences
Time Executed: 
01/03/2019
Materials & Methods (Description and/or Program Settings): 
Aligned simultaneously to Soybean genome and SCN genome to remove contaminating soybean reads.
Category: 

Pages

Subscribe to RSS - Gene expression