Molecular markers (QTL)

LY1 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
LY1 Synthetic isolate, slelected for reproduction on 'Hartwig' 1998 1-7 Laurence Young
Default Track?: 

OP21 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
TN21 1.2.3.4.5.6.7
Default Track?: 

G3 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
G3 Field isolate of "race 3" from Iowa maintained on Kenwood94 1995 0 Greg Tylka
Default Track?: 

PA3 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
PA3 Field isolate of "race 3" maintained on 'Essex' unk. 0 Prakash Arelli
Default Track?: 

OP20 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
OP20 Field isolate from North Carolina, inbred on PI88788 1997 1.2.3.5.6.7 Charles Opperman
Default Track?: 

TN19 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
TN19 LY1 selected by single-cyst descent on Hartwig. 1999 1-7 Terry Niblack
Default Track?: 

OP25 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
OP25 Field isolate from North Carolina, inbred on 'Lee 68' 1997 1.5.7 Charles Opperman
Default Track?: 

TN15 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
TN15 1.2.3.5.6.7
Default Track?: 

TN7 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
TN7 TN1 selected by single-cyst descent on PI 88788. 1996 1.2.5.6.7
Default Track?: 

TN13 SNPS/INDELS

Organism: 
Heterodera glycines tn10 private (Soybean Cyst Nematode (tn10) private)
Program, Pipeline Name or Method Name: 
Freebayes 1.1.0, bcftools 1.10.2 filter
Program, Pipeline or Method version: 
Freebayes snp/indels filtered for depth 3 and minquality 100
Source Name: 
Masonbrink
Time Executed: 
01/28/2021
Materials & Methods (Description and/or Program Settings): 
TN13 1.3.5.6.7
Default Track?: 

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