Fasta sequences of the 80 published effector genes |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Collected from literature |
Baum/Severin Labs |
effector.fasta |
|
Transcripts of genes producing secreted proteins |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Braker genes, SignalP and Tmhmm |
Baum/Severin Labs |
secretedtranscripts.fasta |
|
Trinity Transcripts form Gardner et al 2017 |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Gmap alignment |
NCBI Bioproject PRJNA415980 |
scngenome.gfzz01.1_sorted.gff_.gz |
View on JBrowse |
3H attraction SCN exposed to roots -- SRR5447116 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447116_1 , Chinese Academy of Sciences |
srr5447116_1.fastq_sorted.bw |
View on JBrowse |
3H attraction SCN exposed to roots -- SRR5447111 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447111_1 , Chinese Academy of Sciences |
srr5447111_1.fastq_sorted.bw |
View on JBrowse |
3H control SCN exposed to roots -- SRR5447109 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447109_1 , Chinese Academy of Sciences |
srr5447109_1.fastq_sorted.bw |
View on JBrowse |
24H control SCN exposed to roots -- SRR5447110 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447110 , Chinese Academy of Sciences |
srr5447110_1.fastq_sorted.bw |
View on JBrowse |
24H attraction SCN exposed to roots -- SRR5447113 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447113 , Chinese Academy of Sciences |
srr5447113_1.fastq_sorted.bw |
View on JBrowse |
24H attraction SCN exposed to roots -- SRR5447112 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447112 , Chinese Academy of Sciences |
srr5447112_1.fastq_sorted.bw |
View on JBrowse |
24H control SCN exposed to roots -- SRR5447114 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447114 , Chinese Academy of Sciences |
srr5447114_1.fastq_sorted.bw |
View on JBrowse |
24H control SCN exposed to roots -- SRR5447115 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447115 , Chinese Academy of Sciences |
srr5447115_1.fastq_sorted.bw |
View on JBrowse |
3H attraction SCN exposed to roots -- SRR5447117 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447117 , Chinese Academy of Sciences |
srr5447117_1.fastq_sorted.bw |
View on JBrowse |
3H control SCN exposed to roots -- SRR5447118 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447118 , Chinese Academy of Sciences |
srr5447118_1.fastq_sorted.bw |
View on JBrowse |
3H control SCN exposed to roots -- SRR5447119 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447119 , Chinese Academy of Sciences |
srr5447119_1.fastq_sorted.bw |
View on JBrowse |
24H attraction SCN exposed to roots -- SRR5447108 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trim_galore, Hisat2, Samtools, Bedtools, BedgraphToBigwig |
SRR5447108 , Chinese Academy of Sciences |
srr5447108_1.fastq_sorted.bw |
View on JBrowse |
Alignments of genes producing secreted proteins |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Braker genes, SignalP |
Genes with N terminal secretion signals, and lacking transmembrane domains |
reworkedfunctionalaugustussecreted_sorted.gff_.gz |
View on JBrowse |
Globodera Ellingtonae Gene Predictions |
Related species |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Hisat2, Braker |
Baum/Severin Labs, GCA_001723225.1, SRR3162514 |
globoderaellingtonaegenepredictions.gff_.gz |
|
Annotated Braker Gene Models IPRSCAN |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Interproscan, Swissprot, Uniref |
Baum/Severin Labs |
annotatedcorrectlyaugustus_sorted77.gff_.gz |
View on JBrowse |
Predicted Proteins from V2 Gene Models |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
braker gene prediction, gff2fasta |
From genome assembly |
finalaugustus.pep_.fasta |
|
Annotated Gene Models Heterodera Glycines (updated v2) |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Ortholog based Manual Annotations |
Baum/Severin Labs |
reworkedfunctionalaugustus_sorted_gff0.gz |
View on JBrowse |
Repeat Explorer of TN20 |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
RepeatExplorer2, GMAP |
SRR3924425 |
nononsensehashes_sorted.gff_.gz |
View on JBrowse |
CDS of V2 Gene Models |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Fasta sequences of CDS V2 gene models |
From genome assembly |
gff2fasta.cds_.fasta |
|
H.glycines genome assembly (ABLA00000000.1) synteny |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Braker gene prediction,opscan orthologue calling, iadhore synteny |
Monsanto/JGI |
jgisynteny.bed.gz |
View on JBrowse |
Pre-parasitic J2 (PA3) Biorep 2 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
Pre-parasitic J2 (PA3) Biorep 2 |
sortedppj2_pa3_atcacg.bam.bw |
View on JBrowse |
Parasitic J2 (PA3) EXF63 (Susceptible soybean cultivar) Biorep 2 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
parasitic J2 (PA3) EXF63 (Susceptible soybean cultivar) Biorep 1 |
sortedpj2_s63_ttaggc.bam.bw |
View on JBrowse |
Parasitic J2 (PA3) Forrest (Resistant Soybean) Biorep 1 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
parasitic J2 (PA3) Race 3 Forrest (Resistant soybean cultivar) Biorep 1 |
sortedpj2_race3_forrest.bam.bw |
View on JBrowse |
Pre-parasitic J2 (PA3) Biorep 1 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
Pre-parasitic J2 (PA3) Biorep 1 |
sortedppj2_pa3_tagctt.bam.bw |
View on JBrowse |
parasitic J2 (PA3) EXF63 (Susceptible soybean cultivar) Biorep 1 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
parasitic J2 (PA3) EXF63 (Susceptible soybean cultivar) Biorep 1 |
sortedpj2_s63_tgacca.bam.bw |
View on JBrowse |
Parasitic J2 (PA3) Forrest (Resistant Soybean) Biorep 2 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
hisat2,samtools,bedtools genomcov,bioawk, bedGraphToBigWig |
parasitic J2 (PA3) Race 3 Forrest (Resistant soybean cultivar) Biorep 2 |
sortedpj2_race_3.bw |
View on JBrowse |
Mitochondrial Genes |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
mitos webserver alternative flatworm |
From genome assembly |
mitochondria.gff3.gz |
View on JBrowse |
Genome version 1 with 738 scaffolds |
Genome structure |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
Asssembly - Falcon of transcript mapping preassembled subreads |
TN10 |
genome738sl.polished.mitofixed.fasta |
|
W82_TN19_J2/J3 |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX6 Isoseq Baum/Severin |
sortedidx6_isoforms_present.bed.gz |
View on JBrowse |
W82_TN19_J4/Adult Isoseq reads |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX5 Isoseq Baum/Severin |
sortedidx5_isoforms_present.bed.gz |
View on JBrowse |
W82_TN19_Eggs Isoseq reads |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX4 Isoseq Baum/Severin |
sortedidx4_isoforms_present.bed.gz |
View on JBrowse |
W82_PA3_J4/Adult Isoseq reads |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX3 Isoseq Baum/Severin |
sortedidx3_isoforms_present.bed.gz |
View on JBrowse |
W82_PA3_J2/J3 Isoseq reads |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX2 Isoseq Baum/Severin |
sortedidx2_isoforms_present.bed.gz |
View on JBrowse |
W82_PA3_Eggs Isoseq reads |
Gene expression |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
IDX1 Isoseq Baum/Severin |
sortedidx1_isoforms_present.bed.gz |
View on JBrowse |
Camtech Raw Pacbio RS II subreads |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Blasr mapping of raw Pacbio subreads |
Raw Pacbio subreads (TN10) |
subreads2genome.gff_.gz |
View on JBrowse |
Circular Consensus Pacbio RS II subreads (CCS Reads) |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Blasr mapping of CCS Pacbio reads |
circular consensus reads assembled with smrtanalysis_2.3.0.140936. |
ccs2genome.gff_.gz |
View on JBrowse |
Falcon Assembled Pacbio RS II subreads (pReads) |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Blasr mapping of Pacbio preads to H.glycines genome |
Pacbio pread mapping to genome |
preads2genomegff.gz |
View on JBrowse |
Alignment of 80 published known effector genes (gff3) |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Gmap alignment with default parameters |
80 Known effectors Thomas Baum Lab |
test2.gz |
View on JBrowse |
SNPs across 15 populations of H.glycines |
Molecular markers (QTL) |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
GATK Best Practices: BWA-mem, Picard, GATK |
SNPs called from 15 populations of H. glycines |
sortedrenamed.combined_variants.vcf.gz |
View on JBrowse |
Genes with promoters containing DOG-box motifs |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
MEME to find Dog Box, BLAST to align GS-like effectors |
H.glycines Dog-box genes |
dorsal-likegenessorted.bed.gz |
View on JBrowse |
Helitrons |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Helitron Scanner |
HelitronScanner default on H. glycines genome |
helitronnamedsorted.bed.gz |
View on JBrowse |
80 Effector MEME->FIMO motifs |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
MEME of 80 effector proteins, Genes with protein motifs found with FIMO |
Effector Motifs from the 80 known motifs |
fimogenessorted.bed.gz |
View on JBrowse |
DNA Transposons |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Inverted Repeat Finder,Repeatmodeler, RepeatMasker, Bedtools |
Full length TIR pairs models merged with bedtools. Only those that overlap with repeatmodeler repeats, merged with bed |
supportedirfmergeclassifiedscnbasesorted.bed.gz |
View on JBrowse |
LTR Retroelements |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
LTRFinder, RepeatModeler, RepeatMasker, Bedtools Intersect |
Full length LTR models merged with bedtools. Only those that overlap with repeatmodeler repeats, merged with bed |
ltrretroelementsclassifiedcut_sorted.gff_.gz |
View on JBrowse |
Meloidogyne and Globodera Synteny with H.glycines |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Opscan ortholog calling, iadhore syntenic fragment from multiple species merged with bedtools |
H. glycines synteny with 3 Globodera and 2 Meloidogyne species |
all.synteny_sorted.gff_.gz |
View on JBrowse |
Globodera pallida Synteny with H.glycines |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Opscan ortholog calling, iadhore syntenic fragment |
H. glycines synteny with G. pallida genome (2017) |
pallida_syntenic_ribbons_sorted_txt_gff_sorted.gff_.gz |
View on JBrowse |
Meloidogyne hapla Synteny with H.glycines |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Opscan ortholog calling, iadhore syntenic fragment |
H. glycines synteny with M. hapla genome (2008) |
hapla_syntenic_ribbons_txt_gff_sorted.gff_.gz |
View on JBrowse |
Globodera ellingtonae Synteny with H.glycines |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Braker,Opscan ortholog calling, iadhore syntenic fragment |
H. glycines synteny with G. ellingtonae genome (2017) |
ellingtonae_syntenic_ribbons_txt_gff_sorted.gff_.gz |
View on JBrowse |
Meloidogyne Incognita Syntenic Regions |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Opscan ortholog calling, iadhore syntenic fragment |
H. glycines synteny with M. incognita genome (2016) |
incognita_syntenic_ribbons_txt_gff_sorted.gff_.gz |
View on JBrowse |
High Confidence Horizontal Gene Transfers |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
H. glycines high confidence HGT |
H. glycines high confidence HGT |
highconfhgtsorted.bed.gz |
View on JBrowse |
Tandem Duplications |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Red Tandem used one scaffold at a time |
H. glycines genomic tandem duplications |
redtandemalljbrowsesort.bed.gz |
View on JBrowse |
Globodera rostochiensis Synteny with H.glycines |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Opscan ortholog calling, iadhore syntenic fragment |
H. glycines synteny with G. rostochiensis genome (2016) |
rostochiensis_syntenic_ribbons_txt_gfffixed_sorted.gff_.gz |
View on JBrowse |
NCBI EST Database Entries |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Gmap |
NCBI EST entries for H. glycines |
ests_mapped_sorted_gff_sorted_sorted.gff_.gz |
View on JBrowse |
NCBI Nucleotide Database Entries |
Genes |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Gmap |
NCBI Nucleotide entries for H. glycines |
nucleotide_mapped_sorted_sorted.gff_.gz |
View on JBrowse |
Consensus Isoseq Transcriptome from PA3 and TN19 |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
SmartPortal, Gmap |
H.glycines Isoseq Consensus isoforms |
genome738sl.polished.consensus_isoforms_sorted.gff_.gz |
View on JBrowse |
PA3 Transcriptome on susceptible and resistant soybean |
Transcripts |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Trinity transcriptome with Gmap alignment |
PA3 H. glycines transcriptome. Grown on susceptible and resistant soybean cultivars |
nematode_transcripts_trinity.fasta_sorted_sorted.gff_.gz |
View on JBrowse |
RepeatModeler Repeats |
Genome structure |
Heterodera glycines v2 (Soybean Cyst Nematode (v2)) |
Standard repeatmodeler and repeatmasker pipeline |
H. glycines Genome Repeatmodeler Repeats |
genome738sl.polished.mitofixed.fa_.out_sorted.gff_.gz |
View on JBrowse |
Tandem Duplicates |
Genome structure |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
RedTandem |
ISU Genome Informatics Facility and Thomas Baum Lab |
test_sorted_formatted_gff.gz |
View on JBrowse |
Genome Annotations (Version 1) Merged gene models |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP,Tabix |
ISU Genome Informatics Facility and Thomas Baum Lab |
annotatedcorrectlyaugustus_sorted.gff_.gz |
View on JBrowse |
Mitos Alternative Flatworm |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
MITOS webserver code 14 alternative flatworm |
ISU Genome Informatics Facility and Thomas Baum Lab |
altflatwormcode.fixed_sorted._formatted.gff_.gz |
View on JBrowse |
Mitochondria Gibson et al |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP of Gibson et al genes. |
ISU Genome Informatics Facility and Thomas Baum Lab |
gibson.redone_sorted_formatted.gff_.gz |
View on JBrowse |
Mitchum Trinity Transcripts All 2-17-17 |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP,Tabix |
one population, multiple life stages, Melissa Mitchum |
nematode_transcripts_trinity.fasta_sorted_formatted.gff_.gz |
View on JBrowse |
NCBI_Nucleotide_All |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP,Tabix |
ISU Genome Informatics Facility and Thomas Baum Lab |
nucleotide_mapped_sorted_formatted.gff_.gz |
View on JBrowse |
ISOseq read mapping All |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP,Tabix |
ISU Genome Informatics Facility and Thomas Baum Lab |
isoseq_738_sorted_formatted.gff_.gz |
View on JBrowse |
NCBI_ESTs_All |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP,Tabix |
ISU Genome Informatics Facility and Thomas Baum Lab |
ests_mapped_sorted_gff_sorted_formatted.gff_.gz |
View on JBrowse |
Known Effectors 02-10 |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
ISU Genome Informatics Facility and Thomas Baum Lab |
effector.gmapped.gff3.gz |
View on JBrowse |
RepeatExplorer |
Genome structure |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
ISU Genome Informatics Facility and Thomas Baum Lab |
repeatexplorer.gff3.gz |
View on JBrowse |
Gene Predictions No Masking |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
No repeatmasking, braker |
Thomas Baum Lab/Iowa State University |
sorted_unmasked_738mitofixed.gff3.gz |
View on JBrowse |
pJ2_s63_TGACCA |
Gene expression |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
trimmomatic, hisat2 |
one population, multiple life stages, Melissa Mitchum |
pj2_s63_tgacca_l001_r1_001_fastq_gz_paired_fq_rnaseq_sorted.bam |
View on JBrowse |
Synteny Meloidogyne incognita |
Related species |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
opscan,iadhore |
ISU Genome Informatics Facility |
incognita_syntenic_ribbons_txt_gff.gz |
View on JBrowse |
Synteny Meloidogyne hapla |
Related species |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
opscan,iadhore |
ISU Genome Informatics Facility |
hapla_syntenic_ribbons_txt_gff.gz |
View on JBrowse |
Synteny Globodera ellingtonae |
Related species |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
opscan,iadhore |
ISU Genome Informatics Facility |
ellingtonae_syntenic_ribbons_txt_gff.gz |
View on JBrowse |
Synteny Globodera rostochiensis |
Related species |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
opscan,iadhore |
ISU Genome Informatics Facility |
rostochiensis_syntenic_ribbons_txt_gff.gz |
View on JBrowse |
Synteny Globodera pallida |
Related species |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
opscan,iadhore |
ISU Genome Informatics Facility |
pallida_syntenic_ribbons_sorted_txt_gff.gz |
View on JBrowse |
ISOseq gene models |
Genes |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP, Braker, 738 assembly |
Camtech/NSF Baum Lab/Genome Informatics Facility ISU |
sorted.augustus.gff3.gz |
View on JBrowse |
NCBI_Nucleotide_Transloc |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx21.transloc.sorted.gz |
View on JBrowse |
NCBI_Nucleotide_Mult |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx21.mult_.sorted.gz |
View on JBrowse |
NCBI_Nucleotide_Uniq |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx21.uniq_.sorted.gz |
View on JBrowse |
NCBI_ESTs_Uniq |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx1.uniq_.sorted.gz |
View on JBrowse |
NCBI_ESTs_Mult |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx1.mult_.sorted.gz |
View on JBrowse |
NCBI_ESTs_Transloc |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
NCBI 01-03-17 |
738genomeidx1.transloc.sorted.gz |
View on JBrowse |
PacBio CCS Reads Unique Mapping |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genome.uniq_.sorted.gz |
View on JBrowse |
PacBio CCS Reads Transloc Mapping |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genome.transloc.sorted.gz |
View on JBrowse |
PacBio CCS Reads Multiple Mapping |
|
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genome.mult_.sorted.gz |
View on JBrowse |
ISOSeqidx6 Unique Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx6.uniq_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx6 Transloc Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx6.transloc.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx6 Mult Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx6.mult_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx5 Unique Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx5.uniq_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx5 Transloc Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx5.transloc.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx5 Mult Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx5.mult_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx4 Unique Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx4.uniq_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx4 Transloc Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx4.transloc.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx4 Mult Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx4.mult_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx3 Unique Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx3.uniq_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx3 Transloc Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx3.transloc.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx3 Mult Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx3.mult_.sorted.gff_.gz |
View on JBrowse |
ISOSeqidx2 Unique Mapping |
Transcripts |
Heterodera glycines (Soybean Cyst Nematode (v1)) |
GMAP |
Thomas Baum Lab/Iowa State University |
738genomeidx2.uniq_.sorted.gff_.gz |
View on JBrowse |