Gene Ortholog Familes of H. glycines and Globodera ellingtonae


Opscan (1) was used to call orthologous gene families between H. glycines V1 genome and Globodera ellingtonae (2).

Gene by gene format download: ellingtonaeiadhoretable.docx


Public gene models were not available at the time of the analysis, so genes were called using version 1.  The Globodera genome and the augustus.gff3 file obtained through alignments of SRR3162514 at NCBI.


Augustus.gff3 output of version 1.   gellingtonaeaugustusgff3.docx

The published Globodera ellingtonae genome (2).   gellingtonaegenomefasta.fa_.rtf



1.  Drillon, Guénola, Alessandra Carbone, and Gilles Fischer. "SynChro: a fast and easy tool to reconstruct and visualize synteny blocks along eukaryotic chromosomes." PLoS One 9.3 (2014): e92621.

2.  Phillips, Wendy S., et al. "The draft genome of Globodera ellingtonae." Journal of nematology 49.2 (2017): 127.