Repeat Explorer of TN20

Page

RepeatExplorer is an online tool that can give a bioinformatician a grasp on what repeats are in a genome, as well as their relative abundance.  Here, I took TN20 reads from NCBI (SRR1800548), trimmed with trimmomatic, converted to fasta with the fastx-toolkit, and sorted and interlaced with seqtk.  200,000 reads were retained that maintained the maximum length (150bp) and had a full length mate. Classified repeats were also obtained from running RepeatModeler on the H. glycines genome [1]. These reads were submitted to repeatexplorer.org webserver for analysis with the following parameters: paired=true, rename sequences=true, min overlap for clustering=55, cluster size threshold for detailed analysis=0.002, RepeatMasker database=Metazoa, Custom Repeat Database=true, sequence filtering=false, minimal overlap for assembly =50.  The fasta output from RepeatExplorer was aligned to the genome using gmap (default parameters).  This information can be used alongside the JBrowse track to further describe different repeat types in the genome.

Repeats are sorted from most abundant to least. Below is a sample of what is available in the downloadable file. 

Descriptions of each repeat cluster:  tn20-repeatexplorer_clustering_summary.pdf

Comparisons of repeat quantities beween TN20 RepeatExplorer predictions and those same repeats found in the TN10 genome assembly:

TN20 cluster RepeatExplorer (bp) Length of Repeats in Genome (bp) RepeatExplorer Genome Proportion (%) Actual Genome Proportion (%) Contracted or Expanded in Genome Assembly
CL1 267,150 855,976 0.89 0.6912 Contraction
CL2 231,900 37,896 0.773 0.0306 Contraction
CL3 210,000 64,054 0.7 0.0517 Contraction
CL4 185,550 30,089 0.618 0.0243 Contraction
CL5 167,100 1,051,843 0.557 0.8493 Expansion
CL6 164,700 1,883,594 0.549 1.5209 Expansion
CL7 128,850 39,666 0.43 0.0320 Contraction
CL8 124,050 55,514 0.414 0.0448 Contraction
CL9 97,350 145,918 0.324 0.1178 Contraction
CL10 82,650 159,670 0.276 0.1289 Contraction
CL11 72,750 133,374 0.242 0.1077 Contraction
CL12 71,550 3,400 0.238 0.0027 Contraction
CL13 69,300 598,325 0.231 0.4831 Expansion
CL14 58,650 100,643 0.196 0.0813 Contraction
CL15 51,150 4,346 0.17 0.0035 Contraction
CL16 41,400 12,904 0.138 0.0104 Contraction
CL17 37,350 1,685 0.124 0.0014 Contraction
CL18 30,450 5,468 0.102 0.0044 Contraction
CL19 30,150 2,166 0.1 0.0017 Contraction
CL20 29,550 55,778 0.099 0.0450 Contraction
CL21 29,400 3,691 0.098 0.0030 Contraction
CL22 28,050 169,520 0.093 0.1369 Expansion
CL23 28,050 5,452 0.093 0.0044 Contraction
CL24 27,300 4,308 0.091 0.0035 Contraction
CL25 25,200 3,428 0.084 0.0028 Contraction
CL26 24,450 83,608 0.082 0.0675 Contraction
CL27 24,150 4,692 0.081 0.0038 Contraction
CL28 23,550 35,729 0.079 0.0288 Contraction
CL29 22,050 5,660 0.073 0.0046 Contraction
CL30 20,250 5,929 0.068 0.0048 Contraction
CL31 18,900 416,007 0.063 0.3359 Expansion
CL32 18,300 32,180 0.061 0.0260 Contraction
CL33 17,250 8,087 0.058 0.0065 Contraction
CL34 17,100 1,427 0.057 0.0012 Contraction
CL35 17,100 331,575 0.057 0.2677 Expansion
CL36 16,200 15,628 0.054 0.0126 Contraction
CL37 16,200 1,907 0.054 0.0015 Contraction
CL38 16,050 2,442 0.053 0.0020 Contraction
CL39 16,050 5,629 0.053 0.0045 Contraction
CL40 15,900 2,755 0.053 0.0022 Contraction
CL41 15,900 #N/A 0.053 #N/A #N/A
CL42 15,900 3,561 0.053 0.0029 Contraction
CL43 15,000 2,512 0.05 0.0020 Contraction
CL44 14,400 5,281 0.048 0.0043 Contraction
CL45 13,500 96 0.045 0.0001 Contraction
CL46 13,350 780 0.044 0.0006 Contraction
CL47 12,750 433,541 0.043 0.3501 Expansion
CL48 12,600 1,438 0.042 0.0012 Contraction
CL49 12,450 0 0.042 0.0000 Contraction
CL50 12,450 #N/A 0.042 #N/A #N/A
CL51 11,100 35,071 0.037 0.0283 Contraction
CL52 11,100 6,148 0.037 0.0050 Contraction
CL53 11,100 113,886 0.037 0.0920 Expansion
CL54 10,650 184 0.035 0.0001 Contraction
CL55 10,500 11,271 0.035 0.0091 Contraction
CL56 10,500 14,296 0.035 0.0115 Contraction
CL57 10,350 88,249 0.035 0.0713 Expansion
CL58 10,350 4,810 0.035 0.0039 Contraction
CL59 10,350 27,130 0.035 0.0219 Contraction
CL60 10,200 4,279 0.034 0.0035 Contraction
CL61 69,886 8,207 0.14 0.0066 Contraction
CL62 70,078 68,267 0.14 0.0551 Contraction
CL63 68,229 85 0.136 0.0001 Contraction
CL64 67,888 0 0.136 0.0000 Contraction
CL65 61,149 6,319 0.122 0.0051 Contraction
CL66 61,071 2,192 0.122 0.0018 Contraction
CL67 60,310 600,032 0.121 0.4845 Expansion
CL68 59,849 0 0.12 0.0000 Contraction
CL69 59,355 1,391 0.119 0.0011 Contraction
CL70 57,085 242 0.114 0.0002 Contraction
CL71 56,472 382 0.113 0.0003 Contraction
CL72 55,957 23,399 0.112 0.0189 Contraction
CL73 55,822 1,869 0.112 0.0015 Contraction
CL74 54,678 16,104 0.11 0.0130 Contraction
CL75 53,106 2,830 0.106 0.0023 Contraction
CL76 53,105 316,537 0.106 0.2556 Expansion
CL77 52,836 230,452 0.106 0.1861 Expansion
CL78 51,946 9,364 0.104 0.0076 Contraction
CL79 51,829 2,524 0.104 0.0020 Contraction
CL80 51,544 3,336 0.103 0.0027 Contraction
CL81 51,217 0 0.103 0.0000 Contraction
CL82 51,001 #N/A 0.102 #N/A #N/A
CL83 50,456 145 0.101 0.0001 Contraction
CL84 48,587 3,384 0.0972 0.0027 Contraction
CL85 46,602 3,594 0.0932 0.0029 Contraction
CL86 45,125 2,029 0.0908 0.0016 Contraction
CL87 44,732 19,077 0.0895 0.0154 Contraction
CL88 43,858 3,961 0.0878 0.0032 Contraction
CL89 43,441 #N/A 0.087 #N/A #N/A
CL90 42,969 116 0.086 0.0001 Contraction
CL91 42,772 #N/A 0.0857 #N/A #N/A
CL92 42,699 807 0.0855 0.0007 Contraction
CL93 42,352 5,258 0.0847 0.0042 Contraction
CL94 40,116 3,560 0.0802 0.0029 Contraction
CL95 39,939 4,074 0.08 0.0033 Contraction
CL96 39,095 3,888 0.0782 0.0031 Contraction
CL97 38,107 3,482 0.0762 0.0028 Contraction
CL98 37,843 1,924 0.0758 0.0016 Contraction
CL99 37,426 9,336 0.0752 0.0075 Contraction
CL100 35,955 53,211 0.072 0.0430 Contraction
CL101 35,991 1,916 0.072 0.0015 Contraction
CL102 35,849 2,500 0.0718 0.0020 Contraction
CL103 35,477 82,414 0.071 0.0665 Contraction
CL104 35,246 2,063 0.0705 0.0017 Contraction
CL105 34,842 2,377 0.0697 0.0019 Contraction
CL106 34,566 2,753 0.0692 0.0022 Contraction
CL107 34,122 #N/A 0.0682 #N/A #N/A
CL108 32,290 1,347 0.0648 0.0011 Contraction
CL109 31,720 2,877 0.0635 0.0023 Contraction
CL110 31,343 3,825 0.0628 0.0031 Contraction
CL111 31,188 945 0.0625 0.0008 Contraction
CL112 30,828 #N/A 0.0618 #N/A #N/A
CL113 30,621 3,408 0.0612 0.0028 Contraction
CL114 29,798 28,879 0.0598 0.0233 Contraction
CL115 29,488 2,189 0.059 0.0018 Contraction
CL116 29,333 888 0.0588 0.0007 Contraction
CL117 29,212 2,048 0.0585 0.0017 Contraction
CL118 27,553 4,035 0.0553 0.0033 Contraction
CL119 27,413 #N/A 0.055 #N/A #N/A
CL120 27,291 1,198 0.0548 0.0010 Contraction
CL121 26,346 5,680 0.0528 0.0046 Contraction
CL122 25,723 23,566 0.0515 0.0190 Contraction
CL123 24,981 1,988 0.05 0.0016 Contraction
CL124 24,843 2,302 0.0498 0.0019 Contraction
CL125 24,364 1,511 0.0487 0.0012 Contraction
CL126 24,188 487 0.0485 0.0004 Contraction
CL127 24,132 1,555 0.0485 0.0013 Contraction
CL128 23,851 2,119 0.0478 0.0017 Contraction
CL129 22,948 1,831 0.0462 0.0015 Contraction
CL130 22,961 34,255 0.046 0.0277 Contraction
CL131 22,558 42,757 0.0452 0.0345 Contraction
CL132 22,370 75,332 0.0448 0.0608 Expansion
CL133 22,365 1,067 0.0448 0.0009 Contraction
CL134 21,972 1,705 0.044 0.0014 Contraction
CL135 21,918 #N/A 0.044 #N/A #N/A
CL136 20,911 350 0.042 0.0003 Contraction
CL137 20,882 1,192 0.042 0.0010 Contraction
CL138 20,849 1,221 0.0418 0.0010 Contraction
CL139 20,622 18,838 0.0412 0.0152 Contraction
CL140 19,714 1,288 0.0395 0.0010 Contraction
CL141 19,602 1,156 0.0392 0.0009 Contraction
CL142 19,390 19,090 0.039 0.0154 Contraction
CL143 19,359 1,143 0.0388 0.0009 Contraction
CL144 18,854 1,692 0.0378 0.0014 Contraction
CL145 18,602 280 0.0372 0.0002 Contraction
CL146 18,315 499 0.0368 0.0004 Contraction
CL147 18,368 1,764 0.0368 0.0014 Contraction
CL148 18,364 2,132 0.0368 0.0017 Contraction
CL149 18,211 4,539 0.0365 0.0037 Contraction
CL150 18,248 0 0.0365 0.0000 Contraction
CL151 17,843 165,849 0.0358 0.1339 Expansion
CL152 17,406 118,625 0.035 0.0958 Expansion
CL153 17,247 24,253 0.0345 0.0196 Contraction
CL154 16,868 1,773 0.0338 0.0014 Contraction
CL155 16,864 724 0.0338 0.0006 Contraction
CL156 16,706 2,871 0.0335 0.0023 Contraction
CL157 16,462 758 0.033 0.0006 Contraction
CL158 16,492 1,380 0.033 0.0011 Contraction
CL159 16,121 1,496 0.0322 0.0012 Contraction
CL160 15,871 643 0.0318 0.0005 Contraction
CL161 15,875 1,801 0.0318 0.0015 Contraction
CL162 15,772 10,221 0.0318 0.0083 Contraction
CL163 15,598 36 0.0312 0.0000 Contraction
CL164 15,604 747 0.0312 0.0006 Contraction
CL165 15,496 1,384 0.031 0.0011 Contraction
CL166 15,497 2,058 0.031 0.0017 Contraction
CL167 15,304 25,994 0.0308 0.0210 Contraction
CL168 14,597 #N/A 0.0292 #N/A #N/A
CL169 14,495 96 0.029 0.0001 Contraction
CL170 14,388 #N/A 0.029 #N/A #N/A
CL171 14,368 2,620 0.0288 0.0021 Contraction
CL172 14,122 11,072 0.0282 0.0089 Contraction
CL173 13,992 624,432 0.028 0.5042 Expansion
CL174 13,842 1,926 0.0278 0.0016 Contraction
CL175 13,865 1,500 0.0278 0.0012 Contraction
CL176 13,626 1,967 0.0275 0.0016 Contraction
CL177 13,621 684 0.0272 0.0006 Contraction
CL178 13,353 542 0.0268 0.0004 Contraction
CL179 13,125 9,454 0.0262 0.0076 Contraction
CL180 12,992 804 0.026 0.0006 Contraction
CL181 12,874 836 0.0258 0.0007 Contraction
CL182 12,869 4,598 0.0258 0.0037 Contraction
CL183 12,735 1,866 0.0255 0.0015 Contraction
CL184 12,347 7,789 0.0248 0.0063 Contraction
CL185 12,339 836 0.0248 0.0007 Contraction
CL186 12,360 1,689 0.0248 0.0014 Contraction
CL187 12,176 1,368 0.0245 0.0011 Contraction
CL188 12,105 2,780 0.0242 0.0022 Contraction
CL189 12,124 1,268 0.0242 0.0010 Contraction
CL190 12,123 #N/A 0.0242 #N/A #N/A
CL191 12,100 1,723 0.0242 0.0014 Contraction
CL192 11,982 #N/A 0.024 #N/A #N/A
CL193 11,983 662 0.024 0.0005 Contraction
CL194 11,852 944 0.0238 0.0008 Contraction
CL195 11,868 1,372 0.0238 0.0011 Contraction
CL196 11,701 0 0.0235 0.0000 Contraction
CL197 11,624 21,711 0.0232 0.0175 Contraction
CL198 11,594 #N/A 0.0232 #N/A #N/A
CL199 11,613 72 0.0232 0.0001 Contraction
CL200 11,607 604 0.0232 0.0005 Contraction
CL201 11,309 0 0.0228 0.0000 Contraction
CL202 11,235 1,317 0.0225 0.0011 Contraction
CL203 11,123 678 0.0222 0.0005 Contraction
CL204 11,000 33,593 0.022 0.0271 Expansion
CL205 10,989 1,971 0.022 0.0016 Contraction
CL206 10,825 940 0.0217 0.0008 Contraction
CL207 10,869 1,663 0.0217 0.0013 Contraction
CL208 10,849 25,483 0.0217 0.0206 Contraction
CL209 10,736 2,346 0.0215 0.0019 Contraction
CL210 10,604 1,848 0.0212 0.0015 Contraction
CL211 10,623 34,677 0.0212 0.0280 Expansion
CL212 10,495 772 0.021 0.0006 Contraction
CL213 10,356 36,835 0.0208 0.0297 Expansion
CL214 10,357 246 0.0208 0.0002 Contraction
CL215 10,250 429 0.0205 0.0003 Contraction
CL216 10,123 1,337 0.0202 0.0011 Contraction
CL217 10,102 875 0.0202 0.0007 Contraction
CL218 9,995 0 0.02 0.0000 Contraction
CL219 9,856 1,968 0.0198 0.0016 Contraction
CL220 9,811 1,624 0.0198 0.0013 Contraction
CL221 9,836 2,705 0.0198 0.0022 Contraction
CL222 9,748 1,488 0.0195 0.0012 Contraction
CL223 9,665 6,683 0.0195 0.0054 Contraction
CL224 9,620 34,467 0.0192 0.0278 Expansion
CL225 9,615 848 0.0192 0.0007 Contraction
CL226 9,374 112,507 0.0188 0.0908 Expansion
CL227 9,366 38 0.0188 0.0000 Contraction
CL228 9,367 1,784 0.0188 0.0014 Contraction
CL229 9,245 279 0.0185 0.0002 Contraction
CL230 9,245 1,396 0.0185 0.0011 Contraction
CL231 9,249 3,128 0.0185 0.0025 Contraction
CL232 9,109 529 0.0182 0.0004 Contraction
CL233 9,124 1,056 0.0182 0.0009 Contraction
CL234 8,981 8,886 0.018 0.0072 Contraction
CL235 8,861 1,396 0.0178 0.0011 Contraction
CL236 8,852 #N/A 0.0178 #N/A #N/A
CL237 8,744 0 0.0175 0.0000 Contraction
CL238 8,746 1,251 0.0175 0.0010 Contraction
CL239 8,621 1,028 0.0172 0.0008 Contraction
CL240 8,613 1,160 0.0172 0.0009 Contraction
CL241 8,490 2,618 0.017 0.0021 Contraction
CL242 8,358 952 0.0168 0.0008 Contraction
CL243 8,363 2,477 0.0168 0.0020 Contraction
CL244 8,224 270 0.0165 0.0002 Contraction
CL245 8,250 1,232 0.0165 0.0010 Contraction
CL246 8,242 4,433 0.0165 0.0036 Contraction
CL247 8,120 1,196 0.0162 0.0010 Contraction
CL248 7,962 864 0.016 0.0007 Contraction
CL249 7,870 1,402 0.0158 0.0011 Contraction
CL250 7,868 1,446 0.0158 0.0012 Contraction
CL251 7,620 154,907 0.0152 0.1251 Expansion
CL252 7,625 2,135 0.0152 0.0017 Contraction
CL253 7,610 38,181 0.0152 0.0308 Expansion
CL254 7,500 1,985 0.015 0.0016 Contraction
CL255 7,459 670 0.015 0.0005 Contraction
CL256 7,374 376 0.0148 0.0003 Contraction
CL257 7,360 757 0.0148 0.0006 Contraction
CL258 7,367 864 0.0148 0.0007 Contraction
CL259 7,120 1,650 0.0142 0.0013 Contraction
CL260 7,115 73,393 0.0142 0.0593 Expansion
CL261 6,972 2,380 0.014 0.0019 Contraction
CL262 6,990 324 0.014 0.0003 Contraction
CL263 6,988 26,450 0.014 0.0214 Expansion
CL264 6,989 950 0.014 0.0008 Contraction
CL265 6,989 1,014 0.014 0.0008 Contraction
CL266 6,869 540 0.0138 0.0004 Contraction
CL267 6,859 541 0.0138 0.0004 Contraction
CL268 6,749 876 0.0135 0.0007 Contraction
CL269 6,724 992 0.0135 0.0008 Contraction
CL270 6,747 1,378 0.0135 0.0011 Contraction
CL271 6,588 1,770 0.0132 0.0014 Contraction
CL272 6,608 60 0.0132 0.0000 Contraction
CL273 6,618 732 0.0132 0.0006 Contraction
CL274 6,609 1,050 0.0132 0.0008 Contraction
CL275 6,479 1,078 0.013 0.0009 Contraction
CL276 6,498 45,826 0.013 0.0370 Expansion
CL277 6,239 #N/A 0.0125 #N/A #N/A
CL278 6,112 2,442 0.0122 0.0020 Contraction
CL279 6,110 1,342 0.0122 0.0011 Contraction
CL280 6,109 0 0.0122 0.0000 Contraction
CL281 6,111 819 0.0122 0.0007 Contraction
CL282 5,983 620 0.012 0.0005 Contraction
CL283 5,932 1,171 0.012 0.0009 Contraction
CL284 6,000 98,120 0.012 0.0792 Expansion
CL285 5,999 994 0.012 0.0008 Contraction
CL286 5,862 553 0.0118 0.0004 Contraction
CL287 5,871 926 0.0118 0.0007 Contraction
CL288 5,742 1,424 0.0115 0.0011 Contraction
CL289 5,725 1,598 0.0115 0.0013 Contraction
CL290 5,724 1,121 0.0115 0.0009 Contraction
CL291 5,750 8,872 0.0115 0.0072 Contraction
CL292 5,621 1,639 0.0112 0.0013 Contraction
CL293 5,594 1,334 0.0112 0.0011 Contraction
CL294 5,619 1,461 0.0112 0.0012 Contraction
CL295 5,614 309 0.0112 0.0002 Contraction
CL296 5,607 1,244 0.0112 0.0010 Contraction
CL297 5,496 1,576 0.011 0.0013 Contraction
CL298 5,493 1,000 0.011 0.0008 Contraction
CL299 5,495 622 0.011 0.0005 Contraction
CL300 5,496 5,872 0.011 0.0047 Contraction
CL301 5,497 1,623 0.011 0.0013 Contraction
CL302 5,481 1,216 0.011 0.0010 Contraction
CL303 5,500 996 0.011 0.0008 Contraction
CL304 5,497 945 0.011 0.0008 Contraction
CL305 5,497 1,365 0.011 0.0011 Contraction
CL306 5,328 55 0.0107 0.0000 Contraction
CL307 5,322 1,400 0.0107 0.0011 Contraction
CL308 5,352 640 0.0107 0.0005 Contraction
CL309 5,342 1,337 0.0107 0.0011 Contraction
CL310 5,375 637 0.0107 0.0005 Contraction
CL311 5,362 1,824 0.0107 0.0015 Contraction
CL312 5,373 3,222 0.0107 0.0026 Contraction
CL313 5,249 983 0.0105 0.0008 Contraction
CL314 5,243 808 0.0105 0.0007 Contraction
CL315 5,246 252 0.0105 0.0002 Contraction
CL316 5,247 85 0.0105 0.0001 Contraction
CL317 5,248 735 0.0105 0.0006 Contraction
CL318 5,240 1,120 0.0105 0.0009 Contraction
CL319 5,247 1,222 0.0105 0.0010 Contraction
CL320 5,119 594 0.0102 0.0005 Contraction
CL321 5,124 10,522 0.0102 0.0085 Contraction
CL322 5,118 565 0.0102 0.0005 Contraction
CL323 5,111 620 0.0102 0.0005 Contraction
CL324 5,108 23,299 0.0102 0.0188 Expansion
CL325 5,090 663 0.0102 0.0005 Contraction
CL326 4,999 942 0.01 0.0008 Contraction
CL327 4,978 1,148 0.01 0.0009 Contraction
CL328 4,977 352 0.01 0.0003 Contraction
CL329 5,000 354 0.01 0.0003 Contraction
CL330 5,000 839 0.01 0.0007 Contraction
CL331 4,998 1,351 0.01 0.0011 Contraction
CL332 4,861 11,774 0.0097 0.0095 Contraction
CL333 4,875 1,143 0.0097 0.0009 Contraction
CL334 4,873 535 0.0097 0.0004 Contraction
CL335 4,873 1,620 0.0097 0.0013 Contraction
CL336 4,875 663 0.0097 0.0005 Contraction
CL337 4,874 2,009 0.0097 0.0016 Contraction
CL338 4,856 25,401 0.0097 0.0205 Expansion
CL339 4,869 880 0.0097 0.0007 Contraction
CL340 4,705 549 0.0095 0.0004 Contraction
CL341 4,746 1,761 0.0095 0.0014 Contraction
CL342 4,618 1,609 0.0092 0.0013 Contraction
CL343 4,622 718 0.0092 0.0006 Contraction
CL344 4,625 797 0.0092 0.0006 Contraction
CL345 4,619 1,195 0.0092 0.0010 Contraction
CL346 4,623 1,174 0.0092 0.0009 Contraction
CL347 4,499 748 0.009 0.0006 Contraction
CL348 4,500 #N/A 0.009 #N/A #N/A
CL349 4,500 567 0.009 0.0005 Contraction
CL350 4,498 552 0.009 0.0004 Contraction
CL351 4,500 900 0.009 0.0007 Contraction
CL352 4,500 981 0.009 0.0008 Contraction
CL353 4,374 2,331 0.0088 0.0019 Contraction
CL354 4,361 2,224 0.0088 0.0018 Contraction
CL355 4,347 1,922 0.0088 0.0016 Contraction
CL356 4,374 1,287 0.0088 0.0010 Contraction
CL357 4,374 6,163 0.0088 0.0050 Contraction
CL358 4,370 1,377 0.0088 0.0011 Contraction
CL359 4,365 1,239 0.0088 0.0010 Contraction
CL360 4,239 325 0.0085 0.0003 Contraction
CL361 4,248 1,099 0.0085 0.0009 Contraction
CL362 4,247 1,038 0.0085 0.0008 Contraction
CL363 4,247 1,111 0.0085 0.0009 Contraction
CL364 4,250 894 0.0085 0.0007 Contraction
CL365 4,250 681 0.0085 0.0005 Contraction
CL366 4,242 1,516 0.0085 0.0012 Contraction
CL367 4,247 1,885 0.0085 0.0015 Contraction
CL368 4,115 18,064 0.0083 0.0146 Expansion
CL369 4,120 189 0.0083 0.0002 Contraction
CL370 4,079 340 0.0083 0.0003 Contraction
CL371 4,125 1,231 0.0083 0.0010 Contraction
CL372 4,109 368 0.0083 0.0003 Contraction
CL373 4,115 58,446 0.0083 0.0472 Expansion
CL374 4,124 2,211 0.0083 0.0018 Contraction
CL375 3,999 900 0.008 0.0007 Contraction
CL376 3,991 43,353 0.008 0.0350 Expansion
CL377 3,997 434 0.008 0.0004 Contraction
CL378 3,997 43 0.008 0.0000 Contraction
CL379 4,000 1,273 0.008 0.0010 Contraction
CL380 3,994 #N/A 0.008 #N/A #N/A
CL381 3,858 141 0.0077 0.0001 Contraction
CL382 3,875 1,256 0.0077 0.0010 Contraction
CL383 3,873 701 0.0077 0.0006 Contraction
CL384 3,875 #N/A 0.0077 #N/A #N/A
CL385 3,866 1,495 0.0077 0.0012 Contraction
CL386 3,866 0 0.0077 0.0000 Contraction
CL387 3,866 538 0.0077 0.0004 Contraction
CL388 3,871 713 0.0077 0.0006 Contraction
CL389 3,874 1,288 0.0077 0.0010 Contraction
CL390 3,874 40,578 0.0077 0.0328 Expansion
CL391 3,865 1,412 0.0077 0.0011 Contraction
CL392 3,875 1,655 0.0077 0.0013 Contraction
CL393 3,750 0 0.0075 0.0000 Contraction
CL394 3,750 1,830 0.0075 0.0015 Contraction
CL395 3,740 1,129 0.0075 0.0009 Contraction
CL396 3,746 44 0.0075 0.0000 Contraction
CL397 3,748 1,036 0.0075 0.0008 Contraction
CL398 3,727 #N/A 0.0075 #N/A #N/A
CL399 3,743 10,692 0.0075 0.0086 Expansion
CL400 3,615 1,567 0.0073 0.0013 Contraction
CL401 3,620 588 0.0073 0.0005 Contraction
CL402 3,618 1,414 0.0073 0.0011 Contraction
CL403 3,625 896 0.0073 0.0007 Contraction
CL404 3,612 1,588 0.0073 0.0013 Contraction
CL405 3,625 836 0.0073 0.0007 Contraction
CL406 3,619 632 0.0073 0.0005 Contraction
CL407 3,623 1,196 0.0073 0.0010 Contraction
CL408 3,625 0 0.0073 0.0000 Contraction
CL409 3,493 523 0.007 0.0004 Contraction
CL410 3,499 1,059 0.007 0.0009 Contraction
CL411 3,499 14,155 0.007 0.0114 Expansion
CL412 3,498 10,551 0.007 0.0085 Expansion
CL413 3,500 1,024 0.007 0.0008 Contraction
CL414 3,498 759 0.007 0.0006 Contraction
CL415 3,497 1,156 0.007 0.0009 Contraction
CL416 3,500 861 0.007 0.0007 Contraction
CL417 3,495 427,005 0.007 0.3448 Expansion
CL418 3,497 6,428 0.007 0.0052 Contraction
CL419 3,495 757 0.007 0.0006 Contraction
CL420 3,493 551 0.007 0.0004 Contraction
CL421 3,496 1,379 0.007 0.0011 Contraction
CL422 3,371 1,325 0.0067 0.0011 Contraction
CL423 3,355 968 0.0067 0.0008 Contraction
CL424 3,370 1,036 0.0067 0.0008 Contraction
CL425 3,372 639 0.0067 0.0005 Contraction
CL426 3,364 1,476 0.0067 0.0012 Contraction
CL427 3,372 1,689 0.0067 0.0014 Contraction
CL428 3,365 1,196 0.0067 0.0010 Contraction
CL429 3,373 1,469 0.0067 0.0012 Contraction
CL430 3,371 953 0.0067 0.0008 Contraction
CL431 3,371 516 0.0067 0.0004 Contraction
CL432 3,375 345 0.0067 0.0003 Contraction
CL433 3,372 503 0.0067 0.0004 Contraction
CL434 3,375 1,082 0.0067 0.0009 Contraction
CL435 3,250 580 0.0065 0.0005 Contraction
CL436 3,250 19,209 0.0065 0.0155 Expansion
CL437 3,250 908 0.0065 0.0007 Contraction
CL438 3,250 736 0.0065 0.0006 Contraction
CL439 3,249 1,384 0.0065 0.0011 Contraction
CL440 3,246 1,112 0.0065 0.0009 Contraction
CL441 3,244 868 0.0065 0.0007 Contraction
CL442 3,249 836 0.0065 0.0007 Contraction
CL443 3,249 717 0.0065 0.0006 Contraction
CL444 3,122 #N/A 0.0063 #N/A #N/A
CL445 3,114 263 0.0063 0.0002 Contraction
CL446 3,124 1,072 0.0063 0.0009 Contraction
CL447 3,121 688 0.0063 0.0006 Contraction
CL448 3,116 280,675 0.0063 0.2266 Expansion
CL449 3,124 528 0.0063 0.0004 Contraction
CL450 3,122 608 0.0063 0.0005 Contraction
CL451 3,120 789 0.0063 0.0006 Contraction
CL452 3,122 1,196 0.0063 0.0010 Contraction
CL453 3,124 787 0.0063 0.0006 Contraction
CL454 3,113 2,206 0.0063 0.0018 Contraction
CL455 3,123 744 0.0063 0.0006 Contraction
CL456 2,989 635 0.006 0.0005 Contraction
CL457 3,000 6,767 0.006 0.0055 Contraction
CL458 2,995 #N/A 0.006 #N/A #N/A
CL459 2,999 #N/A 0.006 #N/A #N/A
CL460 2,998 0 0.006 0.0000 Contraction
CL461 3,000 436 0.006 0.0004 Contraction
CL462 3,000 477 0.006 0.0004 Contraction
CL463 2,996 1,256 0.006 0.0010 Contraction
CL464 2,999 823 0.006 0.0007 Contraction
CL465 3,000 500 0.006 0.0004 Contraction
CL466 2,998 #N/A 0.006 #N/A #N/A
CL467 2,982 31,337 0.006 0.0253 Expansion
CL468 2,985 868 0.006 0.0007 Contraction
CL469 3,000 379 0.006 0.0003 Contraction
CL470 2,997 1,231 0.006 0.0010 Contraction
CL471 3,000 640 0.006 0.0005 Contraction
CL472 2,993 1,156 0.006 0.0009 Contraction
CL473 2,994 735 0.006 0.0006 Contraction
CL474 2,989 23,807 0.006 0.0192 Expansion
CL475 2,999 249 0.006 0.0002 Contraction
CL476 2,871 676 0.0057 0.0005 Contraction
CL477 2,875 844 0.0057 0.0007 Contraction
CL478 2,869 977 0.0057 0.0008 Contraction
CL479 2,865 824 0.0057 0.0007 Contraction
CL480 2,871 718 0.0057 0.0006 Contraction
CL481 2,871 288 0.0057 0.0002 Contraction
CL482 2,872 7,235 0.0057 0.0058 Expansion
CL483 2,863 960 0.0057 0.0008 Contraction
CL484 2,869 892 0.0057 0.0007 Contraction
CL485 2,874 2,142 0.0057 0.0017 Contraction
CL486 2,875 1,188 0.0057 0.0010 Contraction
CL487 2,862 1,225 0.0057 0.0010 Contraction
CL488 2,859 1,428 0.0057 0.0012 Contraction
CL489 2,855 1,392 0.0057 0.0011 Contraction
CL490 2,844 1,044 0.0057 0.0008 Contraction
CL491 2,874 1,178 0.0057 0.0010 Contraction
CL492 2,865 0 0.0057 0.0000 Contraction
CL493 2,749 416 0.0055 0.0003 Contraction
CL494 2,740 1,171 0.0055 0.0009 Contraction
CL495 2,741 867 0.0055 0.0007 Contraction
CL496 2,746 492 0.0055 0.0004 Contraction
CL497 2,750 746 0.0055 0.0006 Contraction
CL498 2,750 1,754 0.0055 0.0014 Contraction
CL499 2,749 684 0.0055 0.0006 Contraction
CL500 2,748 948 0.0055 0.0008 Contraction
CL501 2,749 800 0.0055 0.0006 Contraction
CL502 2,736 1,298 0.0055 0.0010 Contraction
CL503 2,739 1,182 0.0055 0.0010 Contraction
CL504 2,749 660 0.0055 0.0005 Contraction
CL505 2,729 15,757 0.0055 0.0127 Expansion
CL506 2,749 408 0.0055 0.0003 Contraction
CL507 2,740 450 0.0055 0.0004 Contraction
CL508 2,750 622 0.0055 0.0005 Contraction
CL509 2,747 1,038 0.0055 0.0008 Contraction
CL510 2,750 749 0.0055 0.0006 Contraction
CL511 2,744 511 0.0055 0.0004 Contraction
CL512 2,748 764 0.0055 0.0006 Contraction
CL513 2,743 455 0.0055 0.0004 Contraction
CL514 2,625 940 0.0053 0.0008 Contraction
CL515 2,618 8,710 0.0053 0.0070 Expansion
CL516 2,597 0 0.0053 0.0000 Contraction
CL517 2,621 288 0.0053 0.0002 Contraction
CL518 2,617 856 0.0053 0.0007 Contraction
CL519 2,622 #N/A 0.0053 #N/A #N/A
CL520 2,624 1,246 0.0053 0.0010 Contraction
CL521 2,624 353 0.0053 0.0003 Contraction
CL522 2,624 1,839 0.0053 0.0015 Contraction
CL523 2,625 276,713 0.0053 0.2234 Expansion
CL524 2,625 556 0.0053 0.0004 Contraction
CL525 2,624 24,637 0.0053 0.0199 Expansion
CL526 2,616 916 0.0053 0.0007 Contraction
CL527 2,607 0 0.0053 0.0000 Contraction
CL528 2,625 #N/A 0.0053 #N/A #N/A
CL529 2,622 5,703 0.0053 0.0046 Contraction
CL530 2,608 615 0.0053 0.0005 Contraction
CL531 2,625 863 0.0053 0.0007 Contraction
CL532 2,624 20,084 0.0053 0.0162 Expansion
CL533 2,492 10,350 0.005 0.0084 Expansion
CL534 2,500 23,870 0.005 0.0193 Expansion
CL535 2,493 195 0.005 0.0002 Contraction
CL536 2,500 677 0.005 0.0005 Contraction
CL537 2,499 64 0.005 0.0001 Contraction
CL538 2,491 820 0.005 0.0007 Contraction
CL539 2,497 466 0.005 0.0004 Contraction
CL540 2,497 7,925 0.005 0.0064 Expansion
CL541 2,492 941 0.005 0.0008 Contraction
CL542 2,484 1,152 0.005 0.0009 Contraction
CL543 2,493 1,031 0.005 0.0008 Contraction
CL544 2,499 522 0.005 0.0004 Contraction
CL545 2,484 0 0.005 0.0000 Contraction
CL546 2,499 687 0.005 0.0006 Contraction
CL547 2,493 559 0.005 0.0005 Contraction
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           
           

1. Masonbrink, Rick E., et al. "The genome of the soybean cyst nematode (Heterodera glycines) reveals complex patterns of duplications involved in the evolution of parasitism genes." bioRxiv (2018): 391276.

Category: