data

How do I upload a bigwig file?

Abbreviated Question: 
How do I upload a bigwig file?
Answer: 

There are at least 4 programs/scripts that are needed to convert a bam to a bigwig file from a standard read mapping bam file. 2 of these are non-standard and will probably need to be downloaded, but are very simple to use and install.

#bioawk can be had from github here https://github.com/lh3/bioawk.  The installation is a breeze: gunzip, cd directory, make.  

What is a SCNBase data curator?

Abbreviated Question: 
What is a SCNBase data curator?
Answer: 

A data curator has expertise in bioinformatics or experience with GMOD tools and JBrowse.  The fastest way to get your data loaded into SCNBase is for a member of each group to familiarize themselves with standard file upload forms.  For more complex training to ensure this community grows, contact Andrew Severin. 

How do I submit data?

Abbreviated Question: 
How do I submit data?
Answer: 

Please contact one of the website data curators via email.  There is likely a data curator from a group with whom you already collaborate.

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