What plant parasitic nematode genomes are available on SCNBase and which is best?

Genome assembly and annotation statistics for H. glycines and related species. BUSCO was run on both Eukaryota_odb10 and Nematoda_odb10, using both genome and predicted proteins. The max missing score was computed by removing the 666 BUSCO genes from Nematoda_odb10, that were not found in any of the 8 genomes assessed. Total represents the total base pairs of every unit (gene, transcript, exon), while count refers to the number of units in the genome. Statistics modified from Masonbrink et al 2021.

 
  H. glycines TN10 pseudomolecule H. glycines TN10 Draft H. glycines X12 pseudomolecule Globodera rostochiensis Globodera pallida Globodera ellingtonae Meloidogyne hapla Meloidogyne incognita
Available on SCNBase Yes Yes Yes No, try Wormbase No, try Wormbase No, try Wormbase.  Annotation is here. No, try Wormbase No, try Wormbase
Number of scaffolds 9 738 267 4,281 6,873 2,246 3,452 12,091
Number of contigs 2,109 738 888 17,236 18,270 13,843 3,452 13,148
Percent scaffolded contigs 100.0% N/A 92.6% 94.2% 90.1% 94.8% N/A 25.0%
Genome size (base pairs) 157,982,452 123,847,574 141,354,287 95,876,286 123,625,196 105,964,814 53,017,507 183,531,997
N50 scaffold length (base pairs) 17,908,190 304,127 16,265,615 88,688 120,481 327,189 37,608 62,516
L50 scaffolds 4 109 4 278 296 85 372 1,209
N's (%) 1.06% 0.00% 0.73% 4.61% 16.17% 0.85% 0.00% 1.81%
Gaps 4,328 0 1,244 47,076 35,940 26,075 N/A 10,490
BUSCO Proteins (Eukaryota_odb10) C:78.0%[S:69.0%,D:9.0%],F:7.8%,M:14.2%,n:255 C:89.0%[S:68.2%,D:20.8%],F:3.1%,M:7.9%,n:255 C:64.7%[S:58.8%,D:5.9%],F:13.7%,M:21.6%,n:255 C:63.2%[S:62.4%,D:0.8%],F:18.4%,M:18.4%,n:255 C:48.2%[S:43.9%,D:4.3%],F:22.4%,M:29.4%,n:255 C:59.6%[S:59.6%,D:0.0%],F:18.4%,M:22.0%,n:255 C:65.1%[S:64.7%,D:0.4%],F:16.9%,M:18.0%,n:255 C:70.2%[S:18.0%,D:52.2%],F:12.2%,M:17.6%,n:255
BUSCO Genome (Nematoda_odb10) C:55.6%[S:52.5%,D:3.1%],F:2.3%,M:42.1%,n:3131 C:55.1%[S:47.4%,D:7.7%],F:2.0%,M:42.9%,n:3131 C:52.2%[S:49.0%,D:3.2%],F:1.8%,M:46.0%,n:3131 C:60.0%[S:58.9%,D:1.1%],F:1.9%,M:38.1%,n:3131 C:46.7%[S:43.5%,D:3.2%],F:2.5%,M:50.8%,n:3131  C:54.4%[S:52.8%,D:1.6%],F:2.4%,M:43.2%,n:3131  C:45.4%[S:44.5%,D:0.9%],F:4.7%,M:49.9%,n:3131 C:63.6%[S:24.0%,D:39.6%],F:1.0%,M:35.4%,n:3131
BUSCO Proteins (Nematoda_odb10) C:60.2%[S:51.5%,D:8.7%],F:1.5%,M:38.3%,n:3131 C:66.5%[S:47.7%,D:18.8%],F:1.6%,M:31.9%,n:3131  C:53.9%[S:49.4%,D:4.5%],F:2.2%,M:43.9%,n:3131  C:66.7%[S:64.3%,D:2.4%],F:2.1%,M:31.2%,n:3131 C:45.6%[S:41.9%,D:3.7%],F:2.8%,M:51.6%,n:3131 C:65.4%[S:56.5%,D:8.9%],F:2.0%,M:32.6%,n:3131 C:59.6%[S:58.5%,D:1.1%],F:2.2%,M:38.2%,n:3131 C:68.5%[S:13.9%,D:54.6%],F:1.7%,M:29.8%,n:3131
BUSCO Max Missing (Nematoda_odb10) 299/2465 (12.1%) 274/2465 (11.1%) 476/2465 (19.3%) 215/2465 (8.7%) 711/2465 (28.8%) 300/2465 (11.4%) 384/2465 (15.6%) 223/2465 (9%)
Gene Statistics Total :  102,643,360
Count:  22,465
Mean:   4,569
Max:    334,901		 Total:  71,832,760
Count:  29,769
Mean:   2,413
Max:    65,717		 Total:  41,620,250
Count:  11,882
Mean:   3,502
Max:    97,943		 Total:  39,556,786
Count:  14,308
Mean:   2,764
Max:    43,003		 Total:  39,553,007
Count:  16,403
Mean:   2,411
Max:    203,234		 Total:  44,105,901
Count:  19,428
Mean:   2,270
Max:    34,634		 Total:  26,366,893
Count:  14,419
Mean:   1,828
Max:    21,476		 Total:  87,998,653
Count:  45,351
Mean:   1,940
Max:    55,968
Transcript Statistics Total:  103,726,162
Count:  23,933
Mean:   4,334
Max:    334,904		 Total:  82,225,676
Count:  32,271
Mean:   2,547
Max:    65,717		 Total:  41,620,250
Count:  11,882
Mean:   3,502
Max:    97,943		 Total:  39,558,194
Count:  14,309
Mean:   2,764
Max:    43,003		 Total:  39,553,007
Count:  16,403
Mean:   2,411
Max:    203,234		 Total:  49,290,306
Count:  20,704
Mean:   2,380
Max:    34,634		 Total:  26,366,893
Count:  14,419
Mean:   1,828
Max:    21,476		 Total:  87,760,630
Count:  43,718
Mean:   2,007
Max:    55,968
Exon Statistics Total:  28,809,023
Count:  182,837
Mean:   157
Max:    5,764		 Total:  38,506,160
Count:  234,671
Mean:   164
Max:    12,491		 Total:  16,809,661
Count:  100,197
Mean:   167
Max:    6,154		 Total:  18,085,706
Count:  125,167
Mean:   144
Max:    11,924		 Total:  17,623,861
Count:  131,459
Mean:   134
Max:    12,238		 Total:  24,938,405
Count:  162,096
Mean:   153
Max:    9,312		 Total:  15,015,088
Count:  88,145
Mean:   170
Max:    8,465		 Total:  48,111,770
Count:  275,269
Mean:   174
Max:    10,685
References Masonbrink, R.E., et al., 2021 Masonbrink, R.E., et al.,  2019 Lian, Y., et al., 2019 Eves-van den Akker, S., et al 2016 Cotton, J.A., et al 2014 Phillips W.S., et al., 2017 Opperman, C.H., et al 2008 Abad, P., et al., 2008